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Transmembrane amino acid transporter family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831376, updated on 18-Sep-2024

Summary

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Official Full Name
Transmembrane amino acid transporter family protein
Primary source
TAIR:AT5G15240
Locus tag
AT5G15240
See related
Araport:AT5G15240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8M21.130; F8M21_130
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (4947577..4950445)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GAST1 protein homolog 4 Neighboring gene FTSH protease 6 Neighboring gene ribosomal protein L34e superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036809.1
NM_001343391.1
NM_121528.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables amino acid transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transmembrane amino acid transporter family protein
NP_001031886.1
  • Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G28960.1); Has 3693 Blast hits to 2957 proteins in 241 species: Archae - 0; Bacteria - 44; Metazoa - 1493; Fungi - 511; Plants - 1240; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
NP_197028.1
  • Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G28960.1); Has 5045 Blast hits to 4985 proteins in 317 species: Archae - 15; Bacteria - 153; Metazoa - 1796; Fungi - 1055; Plants - 1275; Viruses - 9; Other Eukaryotes - 742 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4947577..4950445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121528.3 → NP_197028.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197028.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LXF8
    UniProtKB/TrEMBL
    A0A5S9Y4A1, A0A654G1M0
    Conserved Domains (1) summary
    cl00456
    Location:31 → 416
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. NM_001036809.1 → NP_001031886.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031886.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K9Q4
    Conserved Domains (1) summary
    cl00456
    Location:31 → 306
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. NM_001343391.1 → NP_001332358.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UBI5, A0A1P8BGR6, A0A384KAT5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXF8.1

Gene LinkOut

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