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TBL19 TRICHOME BIREFRINGENCE-LIKE 19 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831447, updated on 18-Sep-2024

Summary

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Official Symbol
TBL19
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 19
Primary source
TAIR:AT5G15900
Locus tag
AT5G15900
See related
Araport:AT5G15900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1N13.40; F1N13_40; TRICHOME BIREFRINGENCE-LIKE 19
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL19 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (5189376..5192176, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase family 81 protein Neighboring gene golgin family A protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 21 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene structural maintenance of chromosomes 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121595.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 19
NP_197094.1
  • TRICHOME BIREFRINGENCE-LIKE 19 (TBL19); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 21 (TAIR:AT5G15890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5189376..5192176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343426.1 → NP_001331997.1  TRICHOME BIREFRINGENCE-LIKE 19 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFJ2, A0A5S9Y4H9, A0A654G1H5

  2. NM_121595.3 → NP_197094.1  TRICHOME BIREFRINGENCE-LIKE 19 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197094.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LFT0
    UniProtKB/TrEMBL
    A0A5S9Y4H9, A0A654G1H5, A0A6G8RRL6
    Conserved Domains (2) summary
    pfam13839
    Location:121 → 408
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:65 → 118
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LFT0.1

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