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TCP-1/cpn60 chaperonin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831464, updated on 18-Sep-2024

Summary

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Official Full Name
TCP-1/cpn60 chaperonin family protein
Primary source
TAIR:AT5G16070
Locus tag
AT5G16070
See related
Araport:AT5G16070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1N13.210; F1N13_210
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Sequence:
Chromosome: 5; NC_003076.8 (5247354..5251179, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene mental retardation GTPase activating protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene general regulatory factor 5 Neighboring gene Cytochrome c oxidase biogenesis protein Cmc1-like protein Neighboring gene carboxyesterase 17 Neighboring gene RAD23 UV excision repair family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis reveals that the Rab GTPase RabE1c is involved in the degradation of the peroxisomal protein receptor PEX7 (peroxin 7). Cui S, et al. J Biol Chem, 2013 Feb 22. PMID 23297417, Free PMC Article
  2. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  3. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  4. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121612.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
  
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
TCP-1/cpn60 chaperonin family protein
NP_197111.2
  • TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G02530.1); Has 18279 Blast hits to 17892 proteins in 3676 species: Archae - 807; Bacteria - 8603; Metazoa - 2077; Fungi - 1456; Plants - 829; Viruses - 0; Other Eukaryotes - 4507 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5247354..5251179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121612.2 → NP_197111.2  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197111.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7N0, Q9LFR8
    UniProtKB/TrEMBL
    A0A178UF36, A0A5S9Y4J3
    Conserved Domains (1) summary
    TIGR02347
    Location:2 → 532
    chap_CCT_zeta; T-complex protein 1, zeta subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7N0.1

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