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MYB56 myb domain protein 56 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831648, updated on 18-Sep-2024

Summary

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Official Symbol
MYB56
Official Full Name
myb domain protein 56
Primary source
TAIR:AT5G17800
Locus tag
AT5G17800
See related
Araport:AT5G17800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMYB56; BRASSINOSTEROIDS AT VASCULAR AND ORGANIZING CENTER; BRAVO; MVA3.150; MVA3_150; myb domain protein 56
Summary
Member of the R2R3 factor gene family that acts as a cell-specific repressor of quiescent center (QC) divisions in the primary root, acting through the BR signaling pathway. Works with BES1 to regulate QC division in the root.
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Genomic context

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See MYB56 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (5877113..5879331)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc finger (Ran-binding) family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene WUSCHEL related homeobox 12 Neighboring gene Peroxidase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MYB56 encoding a R2R3 MYB transcription factor regulates seed size in Arabidopsis thaliana. Zhang Y, et al. J Integr Plant Biol, 2013 Nov. PMID 23911125
  2. Regulation of plant stem cell quiescence by a brassinosteroid signaling module. Vilarrasa-Blasi J, et al. Dev Cell, 2014 Jul 14. PMID 24981610
  3. Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases. Chen L, et al. Mol Plant, 2014 Oct 24. PMID 25343985
  4. Identification of Arabidopsis MYB56 as a novel substrate for CRL3(BPM) E3 ligases. Chen L, et al. Mol Plant, 2015 Feb. PMID 25618823
  5. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Lee JY, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16581911, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MYB56 represents an unknown pathway for positively controlling the seed size.
    Title: MYB56 encoding a R2R3 MYB transcription factor regulates seed size in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121786.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to brassinosteroid stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in endothelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in integument development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of long-day photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in quiescent center organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in regulation of seed growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 56
NP_197282.1
  • myb domain protein 56 (MYB56); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5877113..5879331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121786.4 → NP_197282.1  myb domain protein 56 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197282.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6R053, Q9FN72, Q9ZTD6
    UniProtKB/TrEMBL
    A0A5S9Y5W0
    Conserved Domains (1) summary
    cl28544
    Location:93 → 219
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6R053.1

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