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iqd2 IQ-domain 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831696, updated on 18-Sep-2024

Summary

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Official Symbol
iqd2
Official Full Name
IQ-domain 2
Primary source
TAIR:AT5G03040
Locus tag
AT5G03040
See related
Araport:AT5G03040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15A17.70; F15A17_70; IQ-domain 2
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Genomic context

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See iqd2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (709948..713133, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene ncRNA Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene ncRNA Neighboring gene knotted 1-binding protein Neighboring gene striatin-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus. Bürstenbinder K, et al. Plant Physiol, 2017 Mar. PMID 28115582, Free PMC Article
  2. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Uno Y, et al. Mol Genet Genomics, 2009 Apr. PMID 19130088
  3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  4. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  5. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001161221.1
NM_001203282.1
NM_120382.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
colocalizes_with microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
IQ-domain 2
NP_001154693.1
  • IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1); Has 1155 Blast hits to 1120 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 71; Fungi - 33; Plants - 987; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
NP_001190211.1
  • IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1).
NP_568110.2
  • IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 1 (TAIR:AT3G09710.1); Has 1155 Blast hits to 1120 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 71; Fungi - 33; Plants - 987; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    709948..713133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120382.4 → NP_568110.2  IQ-domain 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568110.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93ZH7, Q9LYY1
    UniProtKB/TrEMBL
    A0A178UAZ3, A0A654FXT6
    Conserved Domains (3) summary
    smart00015
    Location:114 → 135
    IQ; Calmodulin-binding motif
    pfam03999
    Location:271 → 394
    MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
    cd21759
    Location:116 → 203
    CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins

  2. NM_001161221.1 → NP_001154693.1  IQ-domain 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154693.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93ZH7, Q9LYY1
    UniProtKB/TrEMBL
    A0A178UAZ3, A0A654FXT6
    Conserved Domains (3) summary
    smart00015
    Location:114 → 135
    IQ; Calmodulin-binding motif
    pfam03999
    Location:271 → 394
    MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
    cd21759
    Location:116 → 203
    CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins

  3. NM_001203282.1 → NP_001190211.1  IQ-domain 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190211.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93ZH7, Q9LYY1
    UniProtKB/TrEMBL
    A0A178UAZ3, A0A654FXT6
    Conserved Domains (3) summary
    smart00015
    Location:114 → 135
    IQ; Calmodulin-binding motif
    pfam03999
    Location:271 → 394
    MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
    cd21759
    Location:116 → 203
    CBD_MYO6-like; calmodulin binding domain found in unconventional myosin-VI and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93ZH7.1

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