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LAC11 laccase 11 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831887, updated on 18-Sep-2024

Summary

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Official Symbol
LAC11
Official Full Name
laccase 11
Primary source
TAIR:AT5G03260
Locus tag
AT5G03260
See related
Araport:AT5G03260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15A17.290; F15A17_290; laccase 11
Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
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Genomic context

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See LAC11 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (777021..779424, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene senescence regulator (Protein of unknown function, DUF584) Neighboring gene polyubiquitin 3 Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene lysine decarboxylase family protein Neighboring gene NRAMP metal ion transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Laccase is necessary and nonredundant with peroxidase for lignin polymerization during vascular development in Arabidopsis. Zhao Q, et al. Plant Cell, 2013 Oct. PMID 24143805, Free PMC Article
  2. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_120404.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lignin biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
laccase 11
NP_195946.2
  • laccase 11 (LAC11); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    777021..779424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120404.3 → NP_195946.2  laccase 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195946.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WM80, Q8VZA1, Q9LYV9
    UniProtKB/TrEMBL
    A0A178U790, A0A5S9Y184, A0A654FYB0
    Conserved Domains (1) summary
    TIGR03389
    Location:23 → 557
    laccase; plant
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZA1.1

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