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vacuolar sorting-associated protein (DUF946) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831967, updated on 18-Sep-2024

Summary

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Official Full Name
vacuolar sorting-associated protein (DUF946)
Primary source
TAIR:AT5G18490
Locus tag
AT5G18490
See related
Araport:AT5G18490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28N17.2
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (6134114..6136807, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Curculin-like (mannose-binding) lectin family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene plant glycogenin-like starch initiation protein 6 Neighboring gene Protein kinase superfamily protein Neighboring gene Aminotransferase-like, plant mobile domain family protein Neighboring gene Lung seven transmembrane receptor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121854.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
vacuolar sorting-associated protein (DUF946)
NP_197350.1
  • Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT3G04350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6134114..6136807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121854.3 → NP_197350.1  vacuolar sorting-associated protein (DUF946) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197350.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHE6, A0A5S9Y634, Q940K1
    Conserved Domains (1) summary
    pfam06101
    Location:23 → 551
    DUF946; Plant protein of unknown function (DUF946)
Nucleotide Protein
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