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CHR17 chromatin remodeling factor17 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831980, updated on 18-Sep-2024

Summary

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Official Symbol
CHR17
Official Full Name
chromatin remodeling factor17
Primary source
TAIR:AT5G18620
Locus tag
AT5G18620
See related
Araport:AT5G18620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chromatin remodeling factor17; T1A4.2
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Genomic context

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See CHR17 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Sequence:
Chromosome: 5; NC_003076.8 (6195689..6202168, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tonneau 2 (TON2) Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles. Li D, et al. Chromosoma, 2017 Jun. PMID 28213686
  2. ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis. Li G, et al. Plant J, 2014 May. PMID 24606212
  3. Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling. Brzezinka K, et al. Elife, 2016 Sep 28. PMID 27680998, Free PMC Article
  4. Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis. Li G, et al. Plant J, 2012 Oct. PMID 22694359
  5. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Tan LM, et al. Plant Cell, 2020 Jul. PMID 32358072, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121867.4
NM_180516.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleosome array spacer activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of cellular response to heat IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of ISWI-type complex IDA
Inferred from Direct Assay
more info
 PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
chromatin remodeling factor17
NP_568365.2
  • chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25189 Blast hits to 20364 proteins in 2195 species: Archae - 142; Bacteria - 5972; Metazoa - 6064; Fungi - 4945; Plants - 1903; Viruses - 481; Other Eukaryotes - 5682 (source: NCBI BLink).
NP_850847.1
  • chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6195689..6202168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121867.4 → NP_568365.2  chromatin remodeling factor17 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568365.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JY24, Q94C61
    UniProtKB/TrEMBL
    A0A178UKL4, A0A5S9Y5A8
    Conserved Domains (6) summary
    PLN03142
    Location:19 → 1056
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:214 → 353
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:849 → 890
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:510 → 609
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:759 → 835
    HAND; HAND
    pfam09111
    Location:903 → 1012
    SLIDE; SLIDE

  2. NM_180516.2 → NP_850847.1  chromatin remodeling factor17 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850847.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y5A8, A0A7G2FBS6, F4JY25
    Conserved Domains (1) summary
    PLN03142
    Location:19 → 1056
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JY24.1

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