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MSL9 mechanosensitive channel of small conductance-like 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832072, updated on 18-Sep-2024

Summary

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Official Symbol
MSL9
Official Full Name
mechanosensitive channel of small conductance-like 9
Primary source
TAIR:AT5G19520
Locus tag
AT5G19520
See related
Araport:AT5G19520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATMSL9; mechanosensitive channel of small conductance-like 9; T20D1.40; T20D1_40
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Genomic context

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See MSL9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (6585355..6588966)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transferases/nucleotidyltransferase Neighboring gene Histone superfamily protein Neighboring gene Tryptophan/tyrosine permease Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene thermosome subunit gamma Neighboring gene aspartate aminotransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two MscS homologs provide mechanosensitive channel activities in the Arabidopsis root. Haswell ES, et al. Curr Biol, 2008 May 20. PMID 18485707
  2. Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action. Wang P, et al. Proc Natl Acad Sci U S A, 2013 Jul 2. PMID 23776212, Free PMC Article
  3. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MSL9 and MSL10 are required for mechanosensitive channel activities detected in protoplasts derived from root cells [MSL9]
    Title: Two MscS homologs provide mechanosensitive channel activities in the Arabidopsis root.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001343609.1
NM_121957.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mechanosensitive monoatomic ion channel activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within detection of mechanical stimulus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
mechanosensitive channel of small conductance-like 9
NP_197453.1
  • mechanosensitive channel of small conductance-like 9 (MSL9); CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 10 (TAIR:AT5G12080.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6585355..6588966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121957.4 → NP_197453.1  mechanosensitive channel of small conductance-like 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197453.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84M97
    UniProtKB/TrEMBL
    A0A654G2J2, A0A7G2F906
    Conserved Domains (1) summary
    cl39057
    Location:528 → 728
    MS_channel; Mechanosensitive ion channel

  2. NM_001343609.1 → NP_001331595.1  mechanosensitive channel of small conductance-like 9 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84M97
    UniProtKB/TrEMBL
    A0A654G2J2, A0A7G2F906
    Conserved Domains (1) summary
    cl39057
    Location:528 → 728
    MS_channel; Mechanosensitive ion channel
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84M97.1

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