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CHR42 chromatin remodeling 42 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832164, updated on 18-Sep-2024

Summary

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Official Symbol
CHR42
Official Full Name
chromatin remodeling 42
Primary source
TAIR:AT5G20420
Locus tag
AT5G20420
See related
Araport:AT5G20420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chromatin remodeling 42; F7C8.10; F7C8_10
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Genomic context

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See CHR42 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (6898790..6904242, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene monogalactosyldiacylglycerol synthase 2 Neighboring gene Mob1/phocein family protein Neighboring gene Mob1/phocein family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV. Zhang H, et al. Proc Natl Acad Sci U S A, 2013 May 14. PMID 23637343, Free PMC Article
  2. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. Law JA, et al. PLoS Genet, 2011 Jul. PMID 21811420, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_122049.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in gene silencing by siRNA-directed DNA methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
chromatin remodeling 42
NP_197542.1
  • chromatin remodeling 42 (CHR42); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 38 (TAIR:AT3G42670.1); Has 13786 Blast hits to 12302 proteins in 1638 species: Archae - 85; Bacteria - 4157; Metazoa - 3202; Fungi - 3141; Plants - 1285; Viruses - 57; Other Eukaryotes - 1859 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6898790..6904242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122049.3 → NP_197542.1  chromatin remodeling 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197542.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K493
    UniProtKB/TrEMBL
    A0A7G2F900
    Conserved Domains (4) summary
    COG0553
    Location:567 → 1204
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:712 → 886
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:1063 → 1181
    Helicase_C; Helicase conserved C-terminal domain
    pfam16719
    Location:18 → 131
    SAWADEE; SAWADEE domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4K493.1

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