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LSH1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832941, updated on 18-Sep-2024

Summary

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Official Symbol
LSH1
Official Full Name
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Primary source
TAIR:AT5G28490
Locus tag
AT5G28490
See related
Araport:AT5G28490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24J2.30; F24J2_30; LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; OBO2; ORGAN BOUNDARY 2
Summary
Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.
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Genomic context

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See LSH1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (10454388..10455681, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of LSH1, a member of an uncharacterised gene family, causes enhanced light regulation of seedling development. Zhao L, et al. Plant J, 2004 Mar. PMID 14871309
  2. Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes. Lee M, et al. Genes Genomics, 2020 Oct. PMID 32803702
  3. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes.
    Title: Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122732.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mRNA transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in post-embryonic plant morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within response to blue light IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to far red light IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to light stimulus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to red light IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within unidimensional cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
NP_198201.1
  • LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT3G04510.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    10454388..10455681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122732.3 → NP_198201.1  LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198201.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NNI3
    UniProtKB/TrEMBL
    A0A178UNT3, A0A5S9Y7Z8, A0A7G2FDP9
    Conserved Domains (1) summary
    pfam04852
    Location:13 → 138
    DUF640; Protein of unknown function (DUF640)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NNI3.1

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