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SRS8 SHI-related sequence 8 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833279, updated on 18-Sep-2024

Summary

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Official Symbol
SRS8
Official Full Name
SHI-related sequence 8
Primary source
TAIR:AT5G33210
Locus tag
AT5G33210
See related
Araport:AT5G33210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SHI-related sequence 8; T29A4.20; T29A4_20
Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. SRS8 is a putative pseudogene.
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Genomic context

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See SRS8 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (12464746..12465764, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
SHI-related sequence 8
NP_001190419.1
  • SHI-related sequence 8 (SRS8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1).
NP_198306.1
  • SHI-related sequence 8 (SRS8); CONTAINS InterPro DOMAIN/s: Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 305 Blast hits to 305 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    12464746..12465764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203490.2 → NP_001190419.1  SHI-related sequence 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190419.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KH88
    Conserved Domains (2) summary
    TIGR01623
    Location:16 → 58
    put_zinc_LRP1; putative zinc finger domain, LRP1 type
    pfam05142
    Location:15 → 106
    DUF702; Domain of unknown function (DUF702)

  2. NM_122845.1 → NP_198306.1  SHI-related sequence 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198306.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KH89
    Conserved Domains (2) summary
    TIGR01623
    Location:51 → 93
    put_zinc_LRP1; putative zinc finger domain, LRP1 type
    pfam05142
    Location:50 → 140
    DUF702; Domain of unknown function (DUF702)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KH89.1

Gene LinkOut

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