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zinc metalloproteinase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833542, updated on 18-Sep-2024

Summary

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Official Full Name
zinc metalloproteinase-like protein
Primary source
TAIR:AT5G35690
Locus tag
AT5G35690
See related
Araport:AT5G35690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXH1.3; MXH1_3
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (13864646..13868362, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Glycine-rich protein family Neighboring gene IQ-domain 33 Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene zinc metalloproteinase-like protein Neighboring gene nuclease HARBI1-like protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_122960.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc metalloproteinase-like protein
NP_198419.2
  • CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    13864646..13868362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122960.5 → NP_198419.2  zinc metalloproteinase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198419.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y8B0, Q8VYQ7
    Conserved Domains (2) summary
    cd10463
    Location:497 → 597
    PUB_WLM; PNGase/UBA or UBX (PUB) domain of the Wss1p-like metalloprotease (WLM) family
    pfam08325
    Location:144 → 329
    WLM; WLM domain
Nucleotide Protein
Heading Accession and Version

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