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RBCS3B Ribulose bisphosphate carboxylase (small chain) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833828, updated on 18-Sep-2024

Summary

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Official Symbol
RBCS3B
Official Full Name
Ribulose bisphosphate carboxylase (small chain) family protein
Primary source
TAIR:AT5G38410
Locus tag
AT5G38410
See related
Araport:AT5G38410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXI10.13; MXI10_13; Rubisco small subunit 3B
Summary
Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.
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Genomic context

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See RBCS3B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (15376988..15378642, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribulose bisphosphate carboxylase (small chain) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity. Izumi M, et al. J Exp Bot, 2012 Mar. PMID 22223809, Free PMC Article
  2. AtCHIP functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. Luo J, et al. Plant J, 2006 May. PMID 16640601
  3. Cosuppression of RBCS3B in Arabidopsis leads to severe photoinhibition caused by ROS accumulation. Zhan GM, et al. Plant Cell Rep, 2014 Jul. PMID 24682522
  4. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  5. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RBCS1A and RBCS3B contribute to accumulation of Rubisco in Arabidopsis leaves and that these genes work additively to yield sufficient Rubisco for photosynthetic capacity.
    Title: RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_001036904.1
NM_001125859.2
NM_123202.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within photosynthesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ribulose bisphosphate carboxylase complex assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plastid HDA PubMed 
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
Ribulose bisphosphate carboxylase (small chain) family protein
NP_001031981.1
  • Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1997 Blast hits to 1974 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 974; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).
NP_001119331.1
  • Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast ribulose bisphosphate carboxylase complex, apoplast, chloroplast, membrane; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_198657.1
  • Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15376988..15378642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125859.2 → NP_001119331.1  Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119331.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y907, A0A5S9Y931, A0A654G618, A0A7G2FEU3, B3H5S2
    Conserved Domains (1) summary
    PLN02289
    Location:1 → 181
    PLN02289; ribulose-bisphosphate carboxylase small chain

  2. NM_123202.4 → NP_198657.1  Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198657.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P10798, Q9FF21
    UniProtKB/TrEMBL
    A0A178URY8, A0A5S9Y907, A0A654G618, A0A7G2FEU3
    Conserved Domains (1) summary
    PLN02289
    Location:1 → 176
    PLN02289; ribulose-bisphosphate carboxylase small chain

  3. NM_001036904.1 → NP_001031981.1  Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031981.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y907, A0A654G618, A0A7G2FEU3, F4KA76
    Conserved Domains (3) summary
    PLN02289
    Location:1 → 169
    PLN02289; ribulose-bisphosphate carboxylase small chain
    pfam00101
    Location:67 → 168
    RuBisCO_small; Ribulose bisphosphate carboxylase, small chain
    pfam12338
    Location:2 → 42
    RbcS; Ribulose-1,5-bisphosphate carboxylase small subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P10798.2

Gene LinkOut

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