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TUB4 tubulin beta chain 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834459, updated on 18-Sep-2024

Summary

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Official Symbol
TUB4
Official Full Name
tubulin beta chain 4
Primary source
TAIR:AT5G44340
Locus tag
AT5G44340
See related
Araport:AT5G44340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K9L2.12; K9L2_12; tubulin beta chain 4
Summary
beta tubulin gene
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Genomic context

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See TUB4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (17859136..17861150, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene ethylene-responsive nuclear protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phosducin-Like Protein 3 is required for microtubule-dependent steps of cell division but not for meristem growth in Arabidopsis. Castellano MM, et al. Plant Cell, 2008 Apr. PMID 18390592, Free PMC Article
  2. The small genome of Arabidopsis contains at least nine expressed beta-tubulin genes. Snustad DP, et al. Plant Cell, 1992 May. PMID 1498609, Free PMC Article
  3. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  4. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  5. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_123801.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of cytoskeleton ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in plastid HDA PubMed 
part_of tubulin complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
tubulin beta chain 4
NP_199247.1
  • tubulin beta chain 4 (TUB4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, protein polymerization, microtubule-based movement; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-9 chain (TAIR:AT4G20890.1); Has 23619 Blast hits to 23523 proteins in 4869 species: Archae - 36; Bacteria - 51; Metazoa - 4471; Fungi - 14157; Plants - 1545; Viruses - 0; Other Eukaryotes - 3359 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17859136..17861150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123801.2 → NP_199247.1  tubulin beta chain 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199247.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P24636, Q9FKV4
    UniProtKB/TrEMBL
    A0A178UGW7, A0A5S9YB77, Q8GY15
    Conserved Domains (1) summary
    PLN00220
    Location:1 → 431
    PLN00220; tubulin beta chain; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P24636.2

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