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auxin canalization protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834792, updated on 18-Sep-2024

Summary

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Official Full Name
auxin canalization protein (DUF828)
Primary source
TAIR:AT5G47440
Locus tag
AT5G47440
See related
Araport:AT5G47440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNJ7.2; MNJ7_2
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (19243531..19245648, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tryptophan RNA-binding attenuator protein-like protein Neighboring gene DWNN domain, a CCHC-type zinc finger Neighboring gene formyltetrahydrofolate deformylase Neighboring gene pseudo Neighboring gene tonoplast intrinsic protein 2;3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of the Arabidopsis FORKED1-LIKE gene family act to localize PIN1 in developing veins. Prabhakaran Mariyamma N, et al. J Exp Bot, 2018 Sep 14. PMID 29982821, Free PMC Article
  2. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124116.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
auxin canalization protein (DUF828)
NP_199555.1
  • CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT4G17350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19243531..19245648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124116.3 → NP_199555.1  auxin canalization protein (DUF828) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199555.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G8V0, A0A7G2FIT1, Q9FGL4
    Conserved Domains (2) summary
    pfam05703
    Location:43 → 258
    Auxin_canalis; Auxin canalisation
    pfam08458
    Location:283 → 386
    PH_2; Plant pleckstrin homology-like region
Nucleotide Protein
Heading Accession and Version

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