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Ribosomal protein L31e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835772, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein L31e family protein
Primary source
TAIR:AT5G56710
Locus tag
AT5G56710
See related
Araport:AT5G56710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MIK19.16; MIK19_16
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (22943707..22944993, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene Lactate/malate dehydrogenase family protein Neighboring gene Insulinase (Peptidase family M16) protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
  2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  3. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001085289.1
NM_125054.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic large ribosomal subunit HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein L31e family protein
NP_001078758.1
  • Ribosomal protein L31e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054); BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT4G26230.1); Has 842 Blast hits to 842 proteins in 260 species: Archae - 2; Bacteria - 0; Metazoa - 430; Fungi - 129; Plants - 169; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
NP_200482.1
  • Ribosomal protein L31e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054), Ribosomal protein L31e, conserved site (InterPro:IPR020052); BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT4G26230.1); Has 1085 Blast hits to 1085 proteins in 349 species: Archae - 139; Bacteria - 2; Metazoa - 457; Fungi - 145; Plants - 170; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22943707..22944993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125054.3 → NP_200482.1  Ribosomal protein L31e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200482.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P51420, Q8LEJ0, Q9FJU1
    UniProtKB/TrEMBL
    A0A178UUH9, A0A5S9YFS0
    Conserved Domains (1) summary
    pfam01198
    Location:10 → 91
    Ribosomal_L31e; Ribosomal protein L31e

  2. NM_001085289.1 → NP_001078758.1  Ribosomal protein L31e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078758.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MR49
    Conserved Domains (1) summary
    pfam01198
    Location:10 → 56
    Ribosomal_L31e; Ribosomal protein L31e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P51420.2

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