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XH/XS domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836058, updated on 18-Sep-2024

Summary

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Official Full Name
XH/XS domain-containing protein
Primary source
TAIR:AT5G59390
Locus tag
AT5G59390
See related
Araport:AT5G59390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2O15.7; F2O15_7
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (23954326..23957342)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene methyl-CPG-binding domain 6 Neighboring gene tRNA-Gly Neighboring gene tRNA-Gly Neighboring gene PGR5-like A protein Neighboring gene Rab5-interacting family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FDDM1 and FDDM2, Two SGS3-like Proteins, Function as a Complex to Affect DNA Methylation in Arabidopsis. Li S, et al. Genes (Basel), 2022 Feb 12. PMID 35205382, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001345347.1
NM_001345350.1
NM_125330.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables double-stranded RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in gene silencing by siRNA-directed DNA methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
XH/XS domain-containing protein
NP_001318837.1
  • XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT4G01180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23954326..23957342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345348.1 → NP_001331390.1  XH/XS domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YG54, A0A654GCQ4, C0SVU7
    Conserved Domains (3) summary
    COG1196
    Location:152 → 419
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03468
    Location:31 → 143
    XS; XS domain
    pfam03469
    Location:415 → 550
    XH; XH domain

  2. NM_001345349.1 → NP_001331389.1  XH/XS domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YG54, A0A654GCQ4, C0SVU7
    Conserved Domains (3) summary
    COG1196
    Location:152 → 419
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03468
    Location:31 → 143
    XS; XS domain
    pfam03469
    Location:415 → 550
    XH; XH domain

  3. NM_001345347.1 → NP_001318837.1  XH/XS domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GCQ4, Q9LTJ0

  4. NM_001345350.1 → NP_001331388.1  XH/XS domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YG54, A0A654GCQ4, C0SVU7
    Conserved Domains (3) summary
    COG1196
    Location:152 → 419
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03468
    Location:31 → 143
    XS; XS domain
    pfam03469
    Location:415 → 550
    XH; XH domain

  5. NM_125330.1 → NP_200747.1  XH/XS domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200747.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GCQ4, Q9LTJ0
    Conserved Domains (3) summary
    pfam03468
    Location:31 → 143
    XS; XS domain
    pfam03469
    Location:420 → 555
    XH; XH domain
    cl19764
    Location:155 → 235
    COG6; Conserved oligomeric complex COG6
Nucleotide Protein
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