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putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836240, updated on 18-Sep-2024

Summary

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Official Full Name
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein
Primary source
TAIR:AT5G61190
Locus tag
AT5G61190
See related
Araport:AT5G61190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAF19.19; MAF19_19
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (24615253..24620053)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S19e family protein Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene myosin heavy chain-like protein Neighboring gene soluble N-ethylmaleimide-sensitive factor adaptor protein 33 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_125512.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA nuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein
NP_200927.3
  • putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24615253..24620053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345448.1 → NP_001331005.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCI5

  2. NM_001345449.1 → NP_001331004.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMT0, A0A1P8BCJ1

  3. NM_001345451.1 → NP_001331007.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCJ7, A0A5S9YH54

  4. NM_001345450.1 → NP_001331003.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCI5

  5. NM_001345452.1 → NP_001331009.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCJ8, A0A5S9YH54, A0A654GD43
    Conserved Domains (5) summary
    smart00451
    Location:294 → 328
    ZnF_U1; U1-like zinc finger
    COG5246
    Location:451 → 586
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    sd00020
    Location:299 → 321
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd10910
    Location:12 → 136
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam12874
    Location:370 → 392
    zf-met; Zinc-finger of C2H2 type

  6. NM_001345453.1 → NP_001331006.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMT0, A0A1P8BCJ1

  7. NM_001345454.1 → NP_001331008.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKV1, A0A1P8BCK2

  8. NM_001345455.1 → NP_001331002.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCL2, A0A5S9YH54

  9. NM_001345446.1 → NP_001331000.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCH6, Q9FNP6

  10. NM_001345447.1 → NP_001331001.1  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKV1, A0A1P8BCI2

  11. NM_125512.3 → NP_200927.3  putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200927.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K209, Q9FNP6
    Conserved Domains (5) summary
    smart00451
    Location:294 → 328
    ZnF_U1; U1-like zinc finger
    cd10910
    Location:12 → 153
    limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
    COG5246
    Location:412 → 578
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    sd00020
    Location:299 → 321
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:370 → 392
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein
Heading Accession and Version

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