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EMB3144 AAA-type ATPase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836579, updated on 18-Sep-2024

Summary

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Official Symbol
EMB3144
Official Full Name
AAA-type ATPase family protein
Primary source
TAIR:AT5G64580
Locus tag
AT5G64580
See related
Araport:AT5G64580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 3144; MUB3.10; MUB3_10
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Genomic context

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See EMB3144 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (25816918..25821567, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene magnesium transporter 9 Neighboring gene ncRNA Neighboring gene beta-D-xylosidase 4 Neighboring gene NYN domain protein Neighboring gene O-fucosyltransferase family protein Neighboring gene histone acetyltransferase of the MYST family 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis. Lu X, et al. PLoS One, 2014. PMID 24964212, Free PMC Article
  2. Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Mutwil M, et al. Plant Physiol, 2010 Jan. PMID 19889879, Free PMC Article
  3. A Ycf2-FtsHi Heteromeric AAA-ATPase Complex Is Required for Chloroplast Protein Import. Kikuchi S, et al. Plant Cell, 2018 Nov. PMID 30309901, Free PMC Article
  4. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. FtsHi4 localized in chloroplasts as a thylakoid membrane-associated protein and is essential for chloroplast development in Arabdiopsis.
    Title: FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_125854.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables chloroplast protein-transporting ATPase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within protein import into chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of Ycf2/FtsHi complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast inner membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
AAA-type ATPase family protein
NP_201263.2
  • AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 43409 Blast hits to 41131 proteins in 3311 species: Archae - 1622; Bacteria - 19384; Metazoa - 4934; Fungi - 3903; Plants - 3224; Viruses - 61; Other Eukaryotes - 10281 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25816918..25821567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125854.4 → NP_201263.2  AAA-type ATPase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201263.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KF14, Q8RXW9, Q9FLG0
    UniProtKB/TrEMBL
    A0A5S9YJ48, A0A654GE05
    Conserved Domains (1) summary
    TIGR01241
    Location:296 → 751
    FtsH_fam; ATP-dependent metalloprotease FtsH
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KF14.1

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