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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836869, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT5G67340
Locus tag
AT5G67340
See related
Araport:AT5G67340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K8K14.6; K8K14_6
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (26864395..26867847)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene WD-40 repeat family protein Neighboring gene natural resistance associated macrophage protein 4 Neighboring gene uncharacterized protein Neighboring gene Subtilase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exploring the role of a stigma-expressed plant U-box gene in the pollination responses of transgenic self-incompatible Arabidopsis thaliana. Zhang J, et al. Plant Reprod, 2014 Jun. PMID 24573467
  2. EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes. Wang Y, et al. Plant Physiol, 2017 Feb. PMID 27986866, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PUB2 role in the cytokinin signaling networks regulating developmental and physiological processes.PUB2 interaction with XLG1, XLG2 and XlG3 proteins.
    Title: EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
  2. AtPUB2 (AT5G67340) does not function in self-incompatibility.
    Title: Exploring the role of a stigma-expressed plant U-box gene in the pollination responses of transgenic self-incompatible Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001345821.1
NM_126134.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_201535.3
  • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26864395..26867847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126134.5 → NP_201535.3  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201535.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNF4, Q5XEZ8, Q9FN17
    UniProtKB/TrEMBL
    A0A178UMI9, A0A5S9YIC1
    Conserved Domains (3) summary
    PLN03200
    Location:440 → 694
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00043
    Location:458 → 490
    ARM; armadillo repeat [structural motif]
    cd16664
    Location:244 → 286
    RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins

  2. NM_001345821.1 → NP_001332230.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNF4, Q5XEZ8, Q9FN17
    UniProtKB/TrEMBL
    A0A178UMI9, A0A5S9YIC1
    Conserved Domains (3) summary
    PLN03200
    Location:440 → 694
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00043
    Location:458 → 490
    ARM; armadillo repeat [structural motif]
    cd16664
    Location:244 → 286
    RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XEZ8.1

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