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NPY3 Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836880, updated on 18-Sep-2024

Summary

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Official Symbol
NPY3
Official Full Name
Phototropic-responsive NPH3 family protein
Primary source
TAIR:AT5G67440
Locus tag
AT5G67440
See related
Araport:AT5G67440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K8K14.18; K8K14_18; MAB4/ENP/NPY1-LIKE 2; MEL2; NAKED PINS IN YUC MUTANTS 3
Summary
A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.
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Genomic context

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See NPY3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (26912707..26916453, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene zinc-finger protein 1 Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene tRNA-Met

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MAB4-induced auxin sink generates local auxin gradients in Arabidopsis organ formation. Furutani M, et al. Proc Natl Acad Sci U S A, 2014 Jan 21. PMID 24395791, Free PMC Article
  2. Polar-localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. Furutani M, et al. Development, 2011 May. PMID 21490067
  3. NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Cheng Y, et al. Proc Natl Acad Sci U S A, 2008 Dec 30. PMID 19075219, Free PMC Article
  4. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001126043.1
NM_001345830.1
NM_126144.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cellular response to auxin stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within flower development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive gravitropism IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein localization involved in auxin polar transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of auxin polar transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Phototropic-responsive NPH3 family protein
NP_001119515.1
  • NAKED PINS IN YUC MUTANTS 3 (NPY3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT4G37590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_201545.1
  • NAKED PINS IN YUC MUTANTS 3 (NPY3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT4G37590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26912707..26916453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126144.4 → NP_201545.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201545.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93Y14, Q9FN09
    UniProtKB/TrEMBL
    A0A5S9YHW8, A0A7G2FQM0
    Conserved Domains (2) summary
    cd18312
    Location:20 → 127
    BTB_POZ_NPY3-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana protein naked pins in YUC mutants 3 (NPY3), Root phototropism protein 3 (RPT3), and similar proteins
    pfam03000
    Location:205 → 452
    NPH3; NPH3 family

  2. NM_001126043.1 → NP_001119515.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119515.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YHW8, B3H667
    Conserved Domains (1) summary
    pfam03000
    Location:168 → 415
    NPH3; NPH3 family

  3. NM_001345830.1 → NP_001331087.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93Y14, Q9FN09
    UniProtKB/TrEMBL
    A0A5S9YHW8, A0A7G2FQM0
    Conserved Domains (2) summary
    cd18312
    Location:20 → 127
    BTB_POZ_NPY3-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana protein naked pins in YUC mutants 3 (NPY3), Root phototropism protein 3 (RPT3), and similar proteins
    pfam03000
    Location:205 → 452
    NPH3; NPH3 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FN09.1

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