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PUB49 plant U-box 49 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836889, updated on 18-Sep-2024

Summary

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Official Symbol
PUB49
Official Full Name
plant U-box 49
Primary source
TAIR:AT5G67530
Locus tag
AT5G67530
See related
Araport:AT5G67530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATPUB49; K9I9.9; K9I9_9; plant U-box 49; PLANT U-BOX 49
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Genomic context

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See PUB49 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (26941074..26944146)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene voltage dependent anion channel 2 Neighboring gene Translation protein SH3-like family protein Neighboring gene adenosine-5'-phosphosulfate (APS) kinase 4 Neighboring gene Arabinanase/levansucrase/invertase Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_126153.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
  
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant U-box 49
NP_201554.1
  • plant U-box 49 (PUB49); FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box domain (InterPro:IPR003613), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G01940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26941074..26944146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126153.4 → NP_201554.1  plant U-box 49 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201554.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W4J7, Q9FJX0
    UniProtKB/TrEMBL
    A0A178UPX7
    Conserved Domains (4) summary
    cd01923
    Location:345 → 502
    cyclophilin_RING; cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human ...
    cd00162
    Location:103 → 146
    RING_Ubox; U-box domain, a modified RING finger [structural motif]
    cd16663
    Location:38 → 110
    RING-Ubox_PPIL2; U-box domain, a modified RING finger, found in peptidyl-prolyl cis-trans isomerase-like 2 (PPIL2) and similar proteins
    cl17238
    Location:101 → 159
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FJX0.1

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