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GTP binding Elongation factor Tu family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837307, updated on 18-Sep-2024

Summary

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Official Full Name
GTP binding Elongation factor Tu family protein
Primary source
TAIR:AT1G07920
Locus tag
AT1G07920
See related
Araport:AT1G07920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D22.2; T6D22_2
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (2454771..2457321)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene RNAligase Neighboring gene pseudo Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Deruyffelaere C, et al. Plant Cell Physiol, 2015 Jul. PMID 25907570
  2. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article
  3. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784
  4. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  5. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100666.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleolus HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
GTP binding Elongation factor Tu family protein
NP_563799.1
  • GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, nucleolus, plasma membrane, chloroplast, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2454771..2457321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100666.4 → NP_563799.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563799.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MSE8, B9DGN1, P0DH99, P13905, Q0WL56, Q0WSD5, Q39093, Q8GTY0, Q8VZE8, Q8W4H7, Q94AD0, Q9ASU9, Q9C5L4, Q9LN13
    UniProtKB/TrEMBL
    A0A178WJC9, A0A5S9T7A6, A0A5S9YFS8
    Conserved Domains (1) summary
    PTZ00141
    Location:1 → 446
    PTZ00141; elongation factor 1- alpha; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DH99.1
Q0WL56.2
Q8GTY0.2
Q8W4H7.2

Gene LinkOut

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