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GTP binding Elongation factor Tu family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837308, updated on 18-Sep-2024

Summary

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Official Full Name
GTP binding Elongation factor Tu family protein
Primary source
TAIR:AT1G07930
Locus tag
AT1G07930
See related
Araport:AT1G07930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D22.31
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (2458184..2460817)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNAligase Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene Surfeit locus protein 5 subunit 22 of Mediator complex Neighboring gene PDI-like 5-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter. Ng DW, et al. Plant Cell, 2006 Jan. PMID 16326929, Free PMC Article
  2. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
  3. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article
  4. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084014.1
NM_100667.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
GTP binding Elongation factor Tu family protein
NP_001077483.1
  • GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 94933 Blast hits to 81944 proteins in 18755 species: Archae - 1142; Bacteria - 33318; Metazoa - 29343; Fungi - 15688; Plants - 2287; Viruses - 5; Other Eukaryotes - 13150 (source: NCBI BLink).
NP_563800.1
  • GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2458184..2460817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100667.4 → NP_563800.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563800.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MSE8, B9DGN1, P0DH99, P13905, Q0WL56, Q0WSD5, Q39093, Q8GTY0, Q8VZE8, Q8W4H7, Q94AD0, Q9ASU9, Q9C5L4, Q9LN13
    UniProtKB/TrEMBL
    A0A178WJC9, A0A5S9T7A6, A0A5S9YFS8
    Conserved Domains (1) summary
    PTZ00141
    Location:1 → 446
    PTZ00141; elongation factor 1- alpha; Provisional

  2. NM_001084014.1 → NP_001077483.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077483.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YFS8, F4HUA0
    Conserved Domains (4) summary
    PTZ00141
    Location:1 → 369
    PTZ00141; elongation factor 1- alpha; Provisional
    cd01883
    Location:9 → 227
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    cd03705
    Location:254 → 349
    EF1_alpha_III; Domain III of Elongation Factor 1
    cl02787
    Location:230 → 255
    Translation_Factor_II_like; Domain II of Elongation factor Tu (EF-Tu)-like proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DH99.1
Q0WL56.2
Q8GTY0.2
Q8W4H7.2

Gene LinkOut

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