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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 837309, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT1G07940
Locus tag
AT1G07940
See related
TAIR:AT1G07940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D22.3
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (2462949..2465545, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene Surfeit locus protein 5 subunit 22 of Mediator complex Neighboring gene PDI-like 5-1 Neighboring gene cytochrome B561, amino-terminal protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article
  2. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
  3. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  4. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001035916.3
NM_001331743.1
NM_100668.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
GTP binding Elongation factor Tu family protein
NP_001030993.1
  • GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_563801.1
  • GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2462949..2465545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331742.1 → NP_001320768.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MSE8, B9DGN1, P0DH99, P13905, Q0WL56, Q0WSD5, Q39093, Q8GTY0, Q8VZE8, Q8W4H7, Q94AD0, Q9ASU9, Q9C5L4, Q9LN13
    UniProtKB/TrEMBL
    A0A178WJC9, A0A5S9T7A6, A0A5S9YFS8
    Conserved Domains (1) summary
    PTZ00141
    Location:1 → 446
    PTZ00141; elongation factor 1- alpha; Provisional

  2. NM_100668.3 → NP_563801.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563801.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MSE8, B9DGN1, P0DH99, P13905, Q0WL56, Q0WSD5, Q39093, Q8GTY0, Q8VZE8, Q8W4H7, Q94AD0, Q9ASU9, Q9C5L4, Q9LN13
    UniProtKB/TrEMBL
    A0A178WJC9, A0A5S9T7A6, A0A5S9YFS8
    Conserved Domains (1) summary
    PTZ00141
    Location:1 → 446
    PTZ00141; elongation factor 1- alpha; Provisional

  3. NM_001035916.3 → NP_001030993.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030993.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MSE8, B9DGN1, P0DH99, P13905, Q0WL56, Q0WSD5, Q39093, Q8GTY0, Q8VZE8, Q8W4H7, Q94AD0, Q9ASU9, Q9C5L4, Q9LN13
    UniProtKB/TrEMBL
    A0A178WJC9, A0A5S9T7A6, A0A5S9YFS8
    Conserved Domains (1) summary
    PTZ00141
    Location:1 → 446
    PTZ00141; elongation factor 1- alpha; Provisional

  4. NM_001331743.1 → NP_001320767.1  GTP binding Elongation factor Tu family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MSE8, B9DGN1, P0DH99, P13905, Q0WL56, Q0WSD5, Q39093, Q8GTY0, Q8VZE8, Q8W4H7, Q94AD0, Q9ASU9, Q9C5L4, Q9LN13
    UniProtKB/TrEMBL
    A0A178WJC9, A0A5S9T7A6, A0A5S9YFS8
    Conserved Domains (1) summary
    PTZ00141
    Location:1 → 446
    PTZ00141; elongation factor 1- alpha; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DH99.1
Q0WL56.2
Q8GTY0.2
Q8W4H7.2

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