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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 837312, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT1G07970
Locus tag
AT1G07970
See related
TAIR:AT1G07970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D22.6; T6D22_6
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (2469218..2472806, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene Surfeit locus protein 5 subunit 22 of Mediator complex Neighboring gene PDI-like 5-1 Neighboring gene nuclear factor Y, subunit C10 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100671.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cytochrome B561, amino-terminal protein
NP_172275.1
  • CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2469218..2472806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100671.4 → NP_172275.1  cytochrome B561, amino-terminal protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172275.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5B6, A0A5S9T775, Q9LN10
    Conserved Domains (1) summary
    pfam09786
    Location:24 → 688
    CytochromB561_N; Cytochrome B561, N terminal
Nucleotide Protein
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