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AT1G07990 SIT4 phosphatase-associated family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837314, updated on 7-Sep-2023

Summary

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Gene symbol
AT1G07990
Gene description
SIT4 phosphatase-associated family protein
Primary source
Araport:AT1G07990
Locus tag
AT1G07990
See related
TAIR:AT1G07990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D22.8; T6D22_8
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Genomic context

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See AT1G07990 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Sequence:
Chromosome: 1; NC_003070.9 (2476953..2483196)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit C10 Neighboring gene uncharacterized protein Neighboring gene GATA transcription factor 10 Neighboring gene serine/threonine-protein phosphatase 6 regulatory subunit Neighboring gene GATA transcription factor 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100673.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SIT4 phosphatase-associated family protein
NP_172277.2
  • SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT2G28360.1); Has 1048 Blast hits to 891 proteins in 200 species: Archae - 0; Bacteria - 31; Metazoa - 354; Fungi - 329; Plants - 109; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2476953..2483196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331747.1 → NP_001322214.1  SIT4 phosphatase-associated family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATA9

  2. NM_100673.4 → NP_172277.2  SIT4 phosphatase-associated family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172277.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WNK4, Q8L7T5
    Conserved Domains (1) summary
    pfam04499
    Location:129 → 490
    SAPS; SIT4 phosphatase-associated protein
Nucleotide Protein
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