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GATA10 GATA transcription factor 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837315, updated on 18-Sep-2024

Summary

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Official Symbol
GATA10
Official Full Name
GATA transcription factor 10
Primary source
TAIR:AT1G08000
Locus tag
AT1G08000
See related
Araport:AT1G08000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
GATA transcription factor 10; T6D22.9; T6D22_9
Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
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Genomic context

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See GATA10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (2483240..2485726, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene SIT4 phosphatase-associated family protein Neighboring gene serine/threonine-protein phosphatase 6 regulatory subunit Neighboring gene GATA transcription factor 11 Neighboring gene tyrosylprotein sulfotransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100674.3
NM_202061.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GATA transcription factor 10
NP_172278.1
  • GATA transcription factor 10 (GATA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 1492 Blast hits to 1460 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 625; Plants - 786; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
NP_973790.1
  • GATA transcription factor 10 (GATA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2483240..2485726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100674.3 → NP_172278.1  GATA transcription factor 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172278.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZP4, Q9LN07
    UniProtKB/TrEMBL
    A0A178WGW3, A0A5S9T7B6
    Conserved Domains (1) summary
    smart00401
    Location:215 → 268
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]

  2. NM_202061.2 → NP_973790.1  GATA transcription factor 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973790.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZP4, Q9LN07
    UniProtKB/TrEMBL
    A0A178WGW3, A0A5S9T7B6
    Conserved Domains (1) summary
    smart00401
    Location:215 → 268
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZP4.1

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