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paired amphipathic helix Sin3-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837564, updated on 18-Sep-2024

Summary

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Official Full Name
paired amphipathic helix Sin3-like protein
Primary source
TAIR:AT1G10250
Locus tag
AT1G10250
See related
Araport:AT1G10250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14N23.13; F14N23_13
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (3360087..3360508, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein Neighboring gene FAR1-related sequence 11 Neighboring gene pseudo Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
paired amphipathic helix Sin3-like protein
NP_172496.1
  • BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1); Has 310 Blast hits to 310 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 23; Plants - 97; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3360087..3360508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100899.1 → NP_172496.1  paired amphipathic helix Sin3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172496.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EAF7, Q9SY67
    Conserved Domains (1) summary
    pfam16879
    Location:1 → 70
    Sin3a_C; C-terminal domain of Sin3a protein
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials