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cotton fiber, putative (DUF761) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837663, updated on 18-Sep-2024

Summary

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Official Full Name
cotton fiber, putative (DUF761)
Primary source
TAIR:AT1G11220
Locus tag
AT1G11220
See related
Araport:AT1G11220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28P6.12; T28P6_12
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (3759862..3761461, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene cotton fiber protein, putative (DUF761) Neighboring gene transmembrane protein, putative (DUF761) Neighboring gene ribosomal RNA-processing protein Neighboring gene syntaxin of plants 125

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100994.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cotton fiber, putative (DUF761)
NP_172588.1
  • Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11230.1); Has 88 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3759862..3761461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331973.1 → NP_001322607.1  cotton fiber, putative (DUF761) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DSC6, Q9SXA8

  2. NM_100994.3 → NP_172588.1  cotton fiber, putative (DUF761) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172588.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654E9Y7, A0A7G2DSC6, F4I7E9
    Conserved Domains (2) summary
    pfam05553
    Location:284 → 307
    DUF761; Cotton fibre expressed protein
    pfam14364
    Location:40 → 72
    DUF4408; Domain of unknown function (DUF4408)
Nucleotide Protein
Heading Accession and Version

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