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Putative pyridoxal phosphate-dependent enzyme, YBL036C type [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837744, updated on 18-Sep-2024

Summary

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Official Full Name
Putative pyridoxal phosphate-dependent enzyme, YBL036C type
Primary source
TAIR:AT1G11930
Locus tag
AT1G11930
See related
Araport:AT1G11930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12F1.20; F12F1_20
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (4028595..4030656)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Stigma-specific Stig1 family protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101065.3
NM_179318.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Putative pyridoxal phosphate-dependent enzyme, YBL036C type
NP_563897.1
  • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7110 Blast hits to 7110 proteins in 2384 species: Archae - 21; Bacteria - 4266; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2502 (source: NCBI BLink).
NP_849649.1
  • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7155 Blast hits to 7155 proteins in 2359 species: Archae - 21; Bacteria - 4226; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2587 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4028595..4030656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179318.3 → NP_849649.1  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849649.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W250, O65386
    Conserved Domains (1) summary
    cd06822
    Location:27 → 248
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

  2. NM_101065.3 → NP_563897.1  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563897.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q944L8
    Conserved Domains (1) summary
    cd06822
    Location:27 → 250
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
Nucleotide Protein
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