U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837749, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Ubiquitin-like superfamily protein
Primary source
TAIR:AT1G11970
Locus tag
AT1G11970
See related
Araport:AT1G11970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12F1.16; F12F1_16
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (4044370..4044669)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene O-fucosyltransferase family protein Neighboring gene ubiquitin-related protein 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Ubiquitin-like superfamily protein
NP_172661.1
  • Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin-related protein 3 (TAIR:AT1G11980.1); Has 285 Blast hits to 285 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 22; Plants - 105; Viruses - 1; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4044370..4044669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101069.1 → NP_172661.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172661.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O65382
    Conserved Domains (1) summary
    cl28922
    Location:44 → 97
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools