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ELP extensin-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837761, updated on 18-Sep-2024

Summary

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Official Symbol
ELP
Official Full Name
extensin-like protein
Primary source
TAIR:AT1G12090
Locus tag
AT1G12090
See related
Araport:AT1G12090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
extensin-like protein; F12F1.3; F12F1_3
Summary
extensin-like protein (ELP)
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Genomic context

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See ELP in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (4089664..4090857, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Immunoglobulin E-set superfamily protein Neighboring gene Vacuolar calcium-binding protein-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene nitrate transporter 1.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101081.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
extensin-like protein
NP_172673.1
  • extensin-like protein (ELP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G62510.1); Has 793 Blast hits to 787 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 787; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4089664..4090857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101081.3 → NP_172673.1  extensin-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172673.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1A4, O65369
    Conserved Domains (1) summary
    cd01958
    Location:57 → 137
    HPS_like; Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members ...
Nucleotide Protein
Heading Accession and Version

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