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prephenate dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838140, updated on 18-Sep-2024

Summary

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Official Full Name
prephenate dehydrogenase family protein
Primary source
TAIR:AT1G15710
Locus tag
AT1G15710
See related
Araport:AT1G15710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H2.5; F7H2_5
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (5404130..5405910)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Inorganic H pyrophosphatase family protein Neighboring gene ncRNA Neighboring gene ATPase, F1 complex, gamma subunit protein Neighboring gene ncRNA Neighboring gene TRF-like 5 Neighboring gene Cobalamin biosynthesis CobW-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular and biochemical characterization of an Arabidopsis thaliana arogenate dehydrogenase with two highly similar and active protein domains. Rippert P, et al. Plant Mol Biol, 2002 Mar. PMID 11905963
  2. Imbalance of tyrosine by modulating TyrA arogenate dehydrogenases impacts growth and development of Arabidopsis thaliana. de Oliveira MVV, et al. Plant J, 2019 Mar. PMID 30457178
  3. Purification and kinetic analysis of the two recombinant arogenate dehydrogenase isoforms of Arabidopsis thaliana. Rippert P, et al. Eur J Biochem, 2002 Oct. PMID 12354106
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_101439.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
  
enables arogenate dehydrogenase (NADP+) activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables arogenate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
enables prephenate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in shikimate metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in tyrosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in tyrosine metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
prephenate dehydrogenase family protein
NP_173023.1
  • prephenate dehydrogenase family protein; FUNCTIONS IN: prephenate dehydrogenase (NADP+) activity; INVOLVED IN: tyrosine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), Arogenate/prephenate dehydrogenase (InterPro:IPR012070); BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1); Has 919 Blast hits to 907 proteins in 395 species: Archae - 81; Bacteria - 505; Metazoa - 3; Fungi - 100; Plants - 115; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5404130..5405910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101439.5 → NP_173023.1  prephenate dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173023.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7Z4, Q9LMR3
    UniProtKB/TrEMBL
    A0A178W598, A0A5S9UNA1
    Conserved Domains (1) summary
    PLN02256
    Location:23 → 326
    PLN02256; arogenate dehydrogenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LMR3.1

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