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Cobalamin biosynthesis CobW-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838142, updated on 18-Sep-2024

Summary

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Official Full Name
Cobalamin biosynthesis CobW-like protein
Primary source
TAIR:AT1G15730
Locus tag
AT1G15730
See related
Araport:AT1G15730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H2.7; F7H2_7
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (5407401..5410043, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene prephenate dehydrogenase family protein Neighboring gene ncRNA Neighboring gene TRF-like 5 Neighboring gene ncRNA Neighboring gene Leucine-rich repeat family protein Neighboring gene Transducin family protein / WD-40 repeat family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two related families of metal transferases, ZNG1 and ZNG2, are involved in acclimation to poor Zn nutrition in Arabidopsis. Zhang L, et al. Front Plant Sci, 2023. PMID 37965006, Free PMC Article
  2. Mining the soluble chloroplast proteome by affinity chromatography. Bayer RG, et al. Proteomics, 2011 Apr. PMID 21365755, Free PMC Article
  3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_101441.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in response to zinc ion starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast stroma HDA PubMed 

General protein information

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Preferred Names
Cobalamin biosynthesis CobW-like protein
NP_173025.1
  • Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 17 (TAIR:AT1G80480.1); Has 16369 Blast hits to 11834 proteins in 1861 species: Archae - 128; Bacteria - 8189; Metazoa - 1729; Fungi - 553; Plants - 409; Viruses - 6; Other Eukaryotes - 5355 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5407401..5410043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101441.5 → NP_173025.1  Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173025.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMX5, A0A5S9UN08, Q9LMR1
    Conserved Domains (1) summary
    COG0523
    Location:92 → 447
    YejR; GTPase, G3E family [General function prediction only]
Nucleotide Protein
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