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mediator of RNA polymerase II transcription subunit 15a-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838148, updated on 18-Sep-2024

Summary

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Official Full Name
mediator of RNA polymerase II transcription subunit 15a-like protein
Primary source
TAIR:AT1G15790
Locus tag
AT1G15790
See related
Araport:AT1G15790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H2.13; F7H2_13
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (5438171..5440131, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene mediator of RNA polymerase II transcription subunit 15a-like protein Neighboring gene uncharacterized protein Neighboring gene S15/NS1, RNA-binding protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001332186.1
NM_001332187.1
NM_101447.4
NM_202108.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 15a-like protein
NP_173031.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_973837.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5438171..5440131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332185.1 → NP_001322877.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AV92, A0A7G2DT44
    Conserved Domains (1) summary
    pfam16987
    Location:4 → 85
    KIX_2; KIX domain

  2. NM_101447.4 → NP_173031.2  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173031.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAT4, A0A384K8Y6, A0A7G2DT44, Q9LMQ5
    Conserved Domains (1) summary
    pfam16987
    Location:4 → 85
    KIX_2; KIX domain

  3. NM_202108.3 → NP_973837.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973837.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAT4, A0A384K8Y6, A0A7G2DT44, Q9LMQ5
    Conserved Domains (1) summary
    pfam16987
    Location:4 → 85
    KIX_2; KIX domain

  4. NM_001332186.1 → NP_001322875.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAT4, A0A384K8Y6, A0A7G2DT44, Q9LMQ5
    Conserved Domains (1) summary
    pfam16987
    Location:4 → 85
    KIX_2; KIX domain

  5. NM_001332187.1 → NP_001322876.1  mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVD7, A0A5S9ULV2
Nucleotide Protein
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