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S15/NS1, RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838150, updated on 18-Sep-2024

Summary

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Official Full Name
S15/NS1, RNA-binding protein
Primary source
TAIR:AT1G15810
Locus tag
AT1G15810
See related
Araport:AT1G15810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H2.15; F7H2_15
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (5444220..5446564)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 15a-like protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene light harvesting complex photosystem II subunit 6 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene hydroxyproline-rich glycoprotein family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_101449.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
S15/NS1, RNA-binding protein
NP_563982.1
  • S15/NS1, RNA-binding protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: S15/NS1, RNA-binding protein (TAIR:AT1G80620.1); Has 8219 Blast hits to 8219 proteins in 2793 species: Archae - 0; Bacteria - 5437; Metazoa - 107; Fungi - 123; Plants - 505; Viruses - 0; Other Eukaryotes - 2047 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5444220..5446564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101449.5 → NP_563982.1  S15/NS1, RNA-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563982.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WB91, A0A5S9ULY5, A0A654EFC9, Q9LMQ3
    Conserved Domains (1) summary
    pfam00312
    Location:338 → 411
    Ribosomal_S15; Ribosomal protein S15
Nucleotide Protein
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