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Disease resistance protein (CC-NBS-LRR class) family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838159, updated on 18-Sep-2024

Summary

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Official Full Name
Disease resistance protein (CC-NBS-LRR class) family
Primary source
TAIR:AT1G15890
Locus tag
AT1G15890
See related
Araport:AT1G15890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H2.22; F7H2_22
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (5461309..5464241)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene golgi snare 11 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene XH/XS domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional analysis of plant NB-LRR gene L3 by using E. coli. Yang Y, et al. Biochem Biophys Res Commun, 2016 Sep 30. PMID 27586278
  2. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332190.1
NM_101457.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Disease resistance protein (CC-NBS-LRR class) family
NP_173041.1
  • Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5461309..5464241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101457.3 → NP_173041.1  Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173041.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I187, Q9LMP6
    Conserved Domains (3) summary
    sd00031
    Location:539 → 584
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:561 → 579
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:158 → 436
    NB-ARC; NB-ARC domain

  2. NM_001332190.1 → NP_001322964.1  Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVK4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LMP6.2

Gene LinkOut

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