U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Alpha-helical ferredoxin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838239, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Alpha-helical ferredoxin
Primary source
TAIR:AT1G16700
Locus tag
AT1G16700
See related
Araport:AT1G16700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14; ATMLO14; F19K19.1; F19K19_1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (5709624..5712043)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene Enhancer of polycomb-like transcription factor protein Neighboring gene p300/CBP acetyltransferase-related protein-like protein Neighboring gene histone acetyltransferase of the CBP family 12 Neighboring gene ncRNA Neighboring gene high chlorophyll fluorescence phenotype 173

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Photoperiod Affects the Phenotype of Mitochondrial Complex I Mutants. Pétriacq P, et al. Plant Physiol, 2017 Jan. PMID 27852950, Free PMC Article
  2. Proteomic identification of divalent metal cation binding proteins in plant mitochondria. Herald VL, et al. FEBS Lett, 2003 Feb 27. PMID 12606038
  3. Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis. Meyer EH, et al. J Proteome Res, 2008 Feb. PMID 18189341
  4. Analysis of the Arabidopsis mitochondrial proteome. Millar AH, et al. Plant Physiol, 2001 Dec. PMID 11743115, Free PMC Article
  5. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At1g16700 role in Arabidopsis response to different photoperiod
    Title: Photoperiod Affects the Phenotype of Mitochondrial Complex I Mutants.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_101530.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables NADH dehydrogenase (ubiquinone) activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 
part_of respiratory chain complex I HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Alpha-helical ferredoxin
NP_173114.1
  • Alpha-helical ferredoxin; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, respiratory chain complex I; CONTAINS InterPro DOMAIN/s: 4Fe-4S binding domain (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: Alpha-helical ferredoxin (TAIR:AT1G79010.1); Has 11610 Blast hits to 10987 proteins in 2441 species: Archae - 1438; Bacteria - 7070; Metazoa - 154; Fungi - 106; Plants - 790; Viruses - 1; Other Eukaryotes - 2051 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5709624..5712043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101530.4 → NP_173114.1  Alpha-helical ferredoxin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173114.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FX83
    UniProtKB/TrEMBL
    A0A178WCX5, A0A5S9USN9, A0A5S9WVN1
    Conserved Domains (1) summary
    PRK05888
    Location:64 → 222
    PRK05888; NADH-quinone oxidoreductase subunit NuoI
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FX83.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools