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UBC36 ubiquitin-conjugating enzyme 36 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838260, updated on 18-Sep-2024

Summary

Official Symbol
UBC36
Official Full Name
ubiquitin-conjugating enzyme 36
Primary source
TAIR:AT1G16890
Locus tag
AT1G16890
See related
Araport:AT1G16890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtUBC36; F17F16.19; UBC13B; UBIQUITIN CONJUGATING ENZYME 13B; ubiquitin-conjugating enzyme 36
Summary
UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.
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Genomic context

See UBC36 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (5776177..5778529, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ubiquitin-specific protease family C19-related protein Neighboring gene mitochondrial 28S ribosomal protein S29-like protein Neighboring gene uridylyltransferase-like protein Neighboring gene ncRNA Neighboring gene Alg9-like mannosyltransferase family Neighboring gene Curculin-like (mannose-binding) lectin family protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
ubiquitin-conjugating enzyme 36
NP_001185017.1
  • ubiquitin-conjugating enzyme 36 (UBC36); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2).
NP_564011.1
  • ubiquitin-conjugating enzyme 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2); Has 10361 Blast hits to 10354 proteins in 399 species: Archae - 0; Bacteria - 4; Metazoa - 4571; Fungi - 2197; Plants - 1880; Viruses - 23; Other Eukaryotes - 1686 (source: NCBI BLink).
NP_849678.1
  • ubiquitin-conjugating enzyme 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2); Has 10019 Blast hits to 10015 proteins in 393 species: Archae - 0; Bacteria - 4; Metazoa - 4493; Fungi - 2117; Plants - 1786; Viruses - 23; Other Eukaryotes - 1596 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5776177..5778529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198088.1NP_001185017.1  ubiquitin-conjugating enzyme 36 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185017.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I615
    Conserved Domains (2) summary
    COG5078
    Location:1160
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    cl00154
    Location:6159
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
  2. NM_101550.4NP_564011.1  ubiquitin-conjugating enzyme 36 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564011.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3EDA7, Q9FZ48
    UniProtKB/TrEMBL
    A0A5S9URX4, A0A654ECH4
    Conserved Domains (1) summary
    cl00154
    Location:6150
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
  3. NM_179347.2NP_849678.1  ubiquitin-conjugating enzyme 36 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849678.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FZ48
    Conserved Domains (1) summary
    cl00154
    Location:2117
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...