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LAC1 laccase 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838393, updated on 18-Sep-2024

Summary

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Official Symbol
LAC1
Official Full Name
laccase 1
Primary source
TAIR:AT1G18140
Locus tag
AT1G18140
See related
Araport:AT1G18140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATLAC1; laccase 1; T10F20.14
Summary
putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
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Genomic context

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See LAC1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (6238839..6241510, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Class II aaRS and biotin synthetases superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-order mutants reveal an essential requirement for peroxidases but not laccases in Casparian strip lignification. Rojas-Murcia N, et al. Proc Natl Acad Sci U S A, 2020 Nov 17. PMID 33139576, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101674.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Casparian strip IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
laccase 1
NP_173252.2
  • laccase 1 (LAC1); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 17 (TAIR:AT5G60020.1); Has 10262 Blast hits to 8380 proteins in 1481 species: Archae - 46; Bacteria - 4149; Metazoa - 461; Fungi - 3664; Plants - 1564; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6238839..6241510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101674.4 → NP_173252.2  laccase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173252.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LM34, Q9LMS3
    UniProtKB/TrEMBL
    A0A178WCG1
    Conserved Domains (1) summary
    TIGR03389
    Location:28 → 581
    laccase; plant
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LMS3.1

Gene LinkOut

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