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PSAD-2 photosystem I subunit D-2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838400, updated on 18-Sep-2024

Summary

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Official Symbol
PSAD-2
Official Full Name
photosystem I subunit D-2
Primary source
TAIR:AT1G03130
Locus tag
AT1G03130
See related
Araport:AT1G03130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
photosystem I subunit D-2; PSI-D
Summary
Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2)
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Genomic context

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See PSAD-2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (753307..754262, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene responsive to abscisic acid 28 Neighboring gene splicing factor Prp18 family protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana. Yu QB, et al. Cell Res, 2008 Oct. PMID 18813226
  2. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
  3. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  4. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
  5. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100195.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in extracellular region HDA PubMed 
part_of photosystem I reaction center IEA
Inferred from Electronic Annotation
more info
  
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
photosystem I subunit D-2
NP_171812.1
  • photosystem I subunit D-2 (PSAD-2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: photosystem I subunit D-1 (TAIR:AT4G02770.1); Has 509 Blast hits to 509 proteins in 136 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 3; Other Eukaryotes - 198 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    753307..754262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100195.3 → NP_171812.1  photosystem I subunit D-2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171812.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SA56, Q9SUI3
    UniProtKB/TrEMBL
    A0A178W876, A0A5S9SBN0
    Conserved Domains (1) summary
    PLN00041
    Location:11 → 204
    PLN00041; photosystem I reaction center subunit II; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SA56.1

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