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AVA-P2 ATPase, F0/V0 complex, subunit C protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838579, updated on 18-Sep-2024

Summary

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Official Symbol
AVA-P2
Official Full Name
ATPase, F0/V0 complex, subunit C protein
Primary source
TAIR:AT1G19910
Locus tag
AT1G19910
See related
Araport:AT1G19910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATVHA-C2; AVA-2PE; F6F9.3; F6F9_3; VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID; VACUOLAR-TYPE H+ ATPASE C2
Summary
vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)
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Genomic context

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See AVA-P2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (6913001..6914634)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene male-gamete-specific histone H3 Neighboring gene glyoxal oxidase-related protein Neighboring gene Pseudouridine synthase/archaeosine transglycosylase-like family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene glycosyl hydrolase 9B5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Several distinct genes encode nearly identical to 16 kDa proteolipids of the vacuolar H(+)-ATPase from Arabidopsis thaliana. Perera IY, et al. Plant Mol Biol, 1995 Oct. PMID 7579175
  2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
  3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001332418.1
NM_101846.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
  
part_of vacuolar proton-transporting V-type ATPase, V0 domain ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
ATPase, F0/V0 complex, subunit C protein
NP_564098.2
  • AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 340; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6913001..6914634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101846.4 → NP_564098.2  ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564098.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59228
    UniProtKB/TrEMBL
    A0A178W2T3, A0A384KIA7, Q24JM2
    Conserved Domains (2) summary
    TIGR01100
    Location:13 → 121
    V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
    cd18176
    Location:89 → 156
    ATP-synt_Vo_c_ATP6C_rpt2; V-type proton ATPase 16 kDa proteolipid subunit (ATP6C/ATP6V0C/ATP6L/ATPL) and similar proteins

  2. NM_001332418.1 → NP_001321379.1  ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQP0
    Conserved Domains (1) summary
    TIGR01100
    Location:13 → 121
    V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P59228.1

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