U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EXPA11 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838608, updated on 22-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
EXPA11
Primary source
Araport:AT1G20190
Locus tag
AT1G20190
See related
TAIR:AT1G20190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEXP11; ATEXPA11; ATHEXP ALPHA 1.14; EXP11; EXPANSIN 11; expansin 11; EXPANSIN 11; T20H2.4; T20H2_4
Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See EXPA11 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (6998335..6999839, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Glu Neighboring gene transmembrane protein (DUF677) Neighboring gene PAM domain (PCI/PINT associated module) protein Neighboring gene tRNA-Asp

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
  2. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001332440.1
NM_101872.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within plant-type cell wall loosening NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in plant-type cell wall organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within unidimensional cell growth NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
expansin 11
NP_173446.1
  • expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6998335..6999839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101872.4 → NP_173446.1  expansin 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173446.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LNU3
    UniProtKB/TrEMBL
    A0A178WC12, A0A5S9V9M0, Q8LG16
    Conserved Domains (1) summary
    PLN00193
    Location:15 → 252
    PLN00193; expansin-A; Provisional

  2. NM_001332440.1 → NP_001320974.1  expansin 11 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8APG3
    Conserved Domains (1) summary
    PLN00193
    Location:1 → 193
    PLN00193; expansin-A; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LNU3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools