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EMB2719 PAM domain (PCI/PINT associated module) protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838609, updated on 18-Sep-2024

Summary

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Official Symbol
EMB2719
Official Full Name
PAM domain (PCI/PINT associated module) protein
Primary source
TAIR:AT1G20200
Locus tag
AT1G20200
See related
Araport:AT1G20200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 2719; HAP15; HAPLESS 15; T20H2.3; T20H2_3
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Genomic context

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See EMB2719 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (7001087..7004432, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein (DUF677) Neighboring gene expansin 11 Neighboring gene tRNA-Asp Neighboring gene Alba DNA/RNA-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin. Lu Q, et al. Plant J, 2010 Jan. PMID 19843313
  2. Identification of enzymes for adenosine-to-inosine editing and discovery of cytidine-to-uridine editing in nucleus-encoded transfer RNAs of Arabidopsis. Zhou W, et al. Plant Physiol, 2014 Dec. PMID 25315605, Free PMC Article
  3. The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition. Caillaud MC, et al. PLoS Pathog, 2014 Oct. PMID 25393742, Free PMC Article
  4. Structure and functional analysis of the 26S proteasome subunits from plants. Fu H, et al. Mol Biol Rep, 1999 Apr. PMID 10363660
  5. Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. Book AJ, et al. J Biol Chem, 2010 Aug 13. PMID 20516081, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101873.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 
part_of proteasome complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
PAM domain (PCI/PINT associated module) protein
NP_173447.1
  • EMBRYO DEFECTIVE 2719 (EMB2719); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, embryo development ending in seed dormancy; LOCATED IN: proteasome complex, plasma membrane, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: PAM domain (PCI/PINT associated module) protein (TAIR:AT1G75990.1); Has 763 Blast hits to 760 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 164; Plants - 180; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7001087..7004432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101873.3 → NP_173447.1  PAM domain (PCI/PINT associated module) protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173447.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6EMB6, Q8L852, Q9LNU4
    UniProtKB/TrEMBL
    A0A178WL99, A0A5S9V8W3, A0A654EBK6
    Conserved Domains (2) summary
    pfam01399
    Location:311 → 418
    PCI; PCI domain
    pfam08375
    Location:421 → 478
    Rpn3_C; Proteasome regulatory subunit C-terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LNU4.3

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