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RPL27AB [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838938, updated on 22-Aug-2024

Summary

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Official Symbol
RPL27AB
Primary source
Araport:AT1G23290
Locus tag
AT1G23290
See related
TAIR:AT1G23290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
60S RIBOSOMAL PROTEIN L27A; F26F24.13; F26F24_13; RIBOSOMAL PROTEIN L27A; RPL27A
Summary
Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20.
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Genomic context

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See RPL27AB in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (8262925..8263739)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene MAK16 protein-like protein Neighboring gene MATE efflux family protein Neighboring gene glutamate:glyoxylate aminotransferase Neighboring gene tryptophan aminotransferase related 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of ribosomal protein RPL27a in meristem activity and organ development. Szakonyi D, et al. Plant Signal Behav, 2011 May. PMID 21448008, Free PMC Article
  2. Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana. Szakonyi D, et al. Plant J, 2011 Jan. PMID 21223391
  3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  4. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  5. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_102178.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within inflorescence development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within post-embryonic development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translation TAS
Traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic large ribosomal subunit HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
part_of large ribosomal subunit TAS
Traceable Author Statement
more info
  
located_in nucleolus HDA PubMed 
located_in nucleus HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein L18e/L15 superfamily protein
NP_173743.1
  • RPL27AB; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT1G70600.1); Has 1087 Blast hits to 1087 proteins in 423 species: Archae - 174; Bacteria - 23; Metazoa - 355; Fungi - 166; Plants - 138; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8262925..8263739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102178.3 → NP_173743.1  Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173743.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LR33
    UniProtKB/TrEMBL
    A0A178WNT6, A0A5S9VPK6
    Conserved Domains (1) summary
    PTZ00160
    Location:1 → 146
    PTZ00160; 60S ribosomal protein L27a; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LR33.1

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