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ARL1 ARG1-like 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839024, updated on 18-Sep-2024

Summary

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Official Symbol
ARL1
Official Full Name
ARG1-like 1
Primary source
TAIR:AT1G24120
Locus tag
AT1G24120
See related
Araport:AT1G24120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARG1-like 1; F3I6.4; F3I6_4
Summary
encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined.
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Genomic context

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See ARL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (8529064..8532262, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UDP-glucosyl transferase 74B1 Neighboring gene Peroxidase superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Matrixin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SCARECROW has a SHORT-ROOT-independent role in modulating the sugar response. Cui H, et al. Plant Physiol, 2012 Apr. PMID 22312006, Free PMC Article
  2. Fluorescence lifetime imaging of interactions between Golgi tethering factors and small GTPases in plants. Osterrieder A, et al. Traffic, 2009 Aug. PMID 19490533
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_102258.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARG1-like 1
NP_173822.2
  • ARG1-like 1 (ARL1); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 2 (TAIR:AT1G59980.1); Has 24851 Blast hits to 24751 proteins in 3316 species: Archae - 174; Bacteria - 9800; Metazoa - 4410; Fungi - 2460; Plants - 2464; Viruses - 13; Other Eukaryotes - 5530 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8529064..8532262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102258.6 → NP_173822.2  ARG1-like 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173822.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48678, Q8VXV4
    UniProtKB/TrEMBL
    A0A178WD97, A0A384KYZ6, A0A5S9VRI5, Q1EBT7
    Conserved Domains (2) summary
    PRK14284
    Location:20 → 174
    PRK14284; chaperone protein DnaJ; Provisional
    pfam00226
    Location:20 → 82
    DnaJ; DnaJ domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VXV4.1

Gene LinkOut

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