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GIF2 GRF1-interacting factor 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839278, updated on 18-Sep-2024

Summary

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Official Symbol
GIF2
Official Full Name
GRF1-interacting factor 2
Primary source
TAIR:AT1G01160
Locus tag
AT1G01160
See related
Araport:AT1G01160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6F3.29; GRF1-interacting factor 2
Summary
Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA
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Genomic context

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See GIF2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (72339..74096)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 9 Neighboring gene Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein Neighboring gene ncRNA Neighboring gene ozone-responsive stress-like protein (DUF1138) Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Spatio-temporal distribution patterns of GRF-INTERACTING FACTOR expression and leaf size control. Lee BH, et al. Plant Signal Behav, 2014. PMID 25763702, Free PMC Article
  2. The Arabidopsis thaliana GRF-INTERACTING FACTOR gene family plays an essential role in control of male and female reproductive development. Lee BH, et al. Dev Biol, 2014 Feb 1. PMID 24355747
  3. The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties. Lee BH, et al. Plant Physiol, 2009 Oct. PMID 19648231, Free PMC Article
  4. A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. Kim JH, et al. Proc Natl Acad Sci U S A, 2004 Sep 7. PMID 15326298, Free PMC Article
  5. GIF Transcriptional Coregulators Control Root Meristem Homeostasis. Ercoli MF, et al. Plant Cell, 2018 Feb. PMID 29352064, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001160826.1
NM_099998.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription coactivator activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within leaf development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of cell cycle IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
GRF1-interacting factor 2
NP_001154298.1
  • GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_563619.1
  • GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    72339..74096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_099998.4 → NP_563619.1  GRF1-interacting factor 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563619.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9MAL9
    UniProtKB/TrEMBL
    A0A178W6L5, A0A5S9S103, A0A654E6V8
    Conserved Domains (1) summary
    pfam05030
    Location:22 → 73
    SSXT; SSXT protein (N-terminal region)

  2. NM_001160826.1 → NP_001154298.1  GRF1-interacting factor 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154298.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9S103, F4HQJ3
    Conserved Domains (1) summary
    pfam05030
    Location:63 → 108
    SSXT; SSXT protein (N-terminal region)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MAL9.1

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