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TAFII59 TATA BOX ASSOCIATED FACTOR II 59 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839370, updated on 18-Sep-2024

Summary

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Official Symbol
TAFII59
Official Full Name
TATA BOX ASSOCIATED FACTOR II 59
Primary source
TAIR:AT1G04950
Locus tag
AT1G04950
See related
Araport:AT1G04950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTAF6; EMB2781; EMBRYO DEFECTIVE 2781; F13M7.6; F13M7_6; TAF6; TATA BOX ASSOCIATED FACTOR II 59; TBP-associated factor 6
Summary
Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.
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Genomic context

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See TAFII59 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (1403085..1407531, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene HIT-type Zinc finger family protein Neighboring gene translocon at the inner envelope membrane of chloroplasts 20 Neighboring gene golgin family A protein (DUF1664) Neighboring gene lipid-binding serum glycoprotein family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis TFIID factor AtTAF6 controls pollen tube growth. Lago C, et al. Dev Biol, 2005 Sep 1. PMID 16039640
  2. Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis. Wu CJ, et al. Mol Plant, 2021 Jul 5. PMID 33737195
  3. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001035892.3
NM_100373.4
NM_179261.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
  
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TATA BOX ASSOCIATED FACTOR II 59
NP_001030969.1
  • TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_171987.1
  • TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 496 Blast hits to 490 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 144; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
NP_849592.1
  • TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 496 Blast hits to 490 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 144; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1403085..1407531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179261.4 → NP_849592.1  TATA BOX ASSOCIATED FACTOR II 59 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849592.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGR1, B9DH88, Q9MAU3
    UniProtKB/TrEMBL
    A0A178W741, A0A654E7W6
    Conserved Domains (1) summary
    COG5095
    Location:1 → 383
    TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

  2. NM_100373.4 → NP_171987.1  TATA BOX ASSOCIATED FACTOR II 59 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171987.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGR1, B9DH88, Q9MAU3
    UniProtKB/TrEMBL
    A0A178W741, A0A654E7W6
    Conserved Domains (1) summary
    COG5095
    Location:1 → 383
    TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

  3. NM_001035892.3 → NP_001030969.1  TATA BOX ASSOCIATED FACTOR II 59 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030969.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DGR1, B9DH88, Q9MAU3
    UniProtKB/TrEMBL
    A0A178W741, A0A654E7W6
    Conserved Domains (1) summary
    COG5095
    Location:1 → 383
    TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MAU3.1

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